Partially mapped crossover recombines indexed parent sequences while matching genes by position. It is useful when alignment matters because it preserves important index sequences instead of disrupting evolved paths. section 3.4
Use the operator with these practical distinctions:
- Apply it primarily to indexed sequence genes; it may not work as expected with other gene types. section 3.4
- Prefer the uniform partially matched variant when a more balanced exchange of parent sequences is useful, while recognizing that early evolution may become difficult. section 3.4
- Compare results with ordered crossover, which preserves order while allowing rotation, and avoid generic one- or two-point crossover for indexed sequences. section 3.4
Inspecting crossover outcomes
Use genealogy plots to check whether the chosen crossover produces viable, fit offspring and whether evolution flows from less-fit to more-fit generations. Comparing genealogy plots helps reveal differences between crossover operations. section 3.4
